Publications |
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1. Portales-Casamar E, Swanson DJ, Liu L, de Leeuw CN, Banks KG, Ho Sui SJ, Fulton DL, Ali J,
Amirabbasi M, Arenillas DJ, Babyak N, Black SF, Bonaguro RJ, Brauer E, Candido TR, Castellarin M,
Chen J, Chen Y, Cheng JC, Chopra V, Docking TR, Dreolini L, D'Souza CA, Flynn EK, Glenn R, Hatakka K,
Hearty TG, Imanian B, Jiang S, Khorasan-zadeh S, Komljenovic I, Laprise S, Liao NY, Lim JS, Lithwick S,
Liu F, Liu J, Lu M, McConechy M, McLeod AJ, Milisavljevic M, Mis J, O'Connor K, Palma B, Palmquist DL,
Schmouth JF, Swanson MI, Tam B, Ticoll A, Turner JL, Varhol R, Vermeulen J, Watkins RF, Wilson G,
Wong BK, Wong SH, Wong TY, Yang GS, Ypsilanti AR, Jones SJ, Holt RA, Goldowitz D, Wasserman WW,
Simpson EM. (2010) A regulatory toolbox of MiniPromoters to drive selective expression in the brain.
Proc Natl Acad Sci USA. 107, 16589-16594. 2. Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, Fouse SD, Johnson BE, Hong C,
Nielsen C, Zhao Y, Turecki G, Delaney A, Varhol R, Thiessen N, Shchors K, Heine VM, Rowitch DH,
Xing X, Fiore C, Schillebeeckx M, Jones SJ, Haussler D, Marra MA, Hirst M, Wang T, Costello JF.
(2010) Conserved role of intragenic DNA methylation in regulating alternative promoters.
Nature 466, 253-257. 3. Milisavljevic M, Hearty T, Wong TY, Portales-Casamar E, Simpson EM, Wasserman WW.
(2010) Laboratory Animal Management Assistant (LAMA): a LIMS for active research colonies.
Mamm Genome. 21, 224-230. 4. Portales-Casamar E, Thongjuea S, Kwon AT, Arenillas D, Zhao X, Valen E, Yusuf D, Lenhard B, Wasserman WW,
Sandelin A. (2010) JASPAR 2010: the greatly expanded open-access database of transcription factor binding
profiles. Nucleic Acids Res. 38(Database issue), D105-110. 5. Yang GS, Banks KG, Bonaguro RJ, Wilson G, Dreolini L, de Leeuw CN, Liu L, Swanson
DJ, Goldowitz D, Holt RA, Simpson EM. (2009) Next generation tools for high-throughput
promoter and expression analysis employing single-copy knock-ins at the Hprt1 locus.
Genomics. 93, 196-204. 6. Portales-Casamar E, Arenillas D, Lim J, Swanson MI, Jiang S, McCallum A, Kirov S, Wasserman WW. (2009)
The PAZAR Database of Gene Regulatory Information Coupled to the ORCA Toolkit for the Study of Regulatory
Sequences. Nucleic Acids Res. 27(Database Issue), D54-60. 7. D'Souza CA, Chopra V, Varhol R, Xie Y, Bohacec S, Zhao Y, Lee LLC, Bilenky M, Portales-Casamar
E, He A, Wasserman WW, Goldowitz D, Marra MA, Holt RA, Simpson EM, Jones SJM. (2008)
Identification of a set of genes showing regionally enriched expression in the mouse
brain. BMC Neurosci. 9, 66. 8. Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M,
Haeussler M, Griffith M, Gallo SM, Giardine B, Hooghe B, Van Loo P, Blanco E, Ticoll A, Lithwick S, Portales-
Casamar E, Donaldson IJ, Robertson G, Wadelius C, De Bleser P, Vlieghe D, Halfon MS, Wasserman W, Hardison
R, Bergman CM, Jones SJ. (2008) Open Regulatory Annotation Consortium. ORegAnno: an open-access community-
driven resource for regulatory annotation. Nucleic Acids Res. 36(Database issue),
D107-113. 9. Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson MI, Ticoll A, Snoddy J, Wasserman
WW. (2007) PAZAR: a Framework for Collection and Dissemination of Cis-regulatory
Sequence Annotation. Genome Biol. 8, R207. 10. Robertson G, Bilenky M, Lin K, He A, Yuen W, Dagpinar M, Varhol R, Teague K, Griffith OL, Zhang X, Pan
Y, Hassel M, Sleumer MC, Pan W, Pleasance ED, Chuang M, Hao H, Li YY, Robertson N, Fjell C, Li B,
Montgomery SB, Astakhova T, Zhou J, Sander J, Siddiqui AS, Jones SJ. (2006) cisRED: a database system for
genome-scale computational discovery of regulatory elements. Nucleic Acids Res. 34(Database
issue), D68-73. |
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