Publications

Yang GS, Banks KG, Bonaguro RJ, Wilson G, Dreolini L, de Leeuw CN, Liu L, Swanson DJ, Goldowitz D, Holt RA, Simpson EM. (2009) Next generation tools for high-throughput promoter and expression analysis employing single-copy knock-ins at the Hprt1 locus. Genomics. 93, 196-204.
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Download: Yang 2008 #4714.pdf

D'Souza CA, Chopra V, Varhol R, Xie Y, Bohacec S, Zhao Y, Lee LLC, Bilenky M, Portales-Casamar E, He A, Wasserman WW, Goldowitz D, Marra MA, Holt RA, Simpson EM, Jones SJM. (2008) Identification of a set of genes showing regionally enriched expression in the mouse brain. BMC Neurosci. 9, 66.
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Download: D’Souza 2008.pdf
Additional file 1: Compilation of SAGE data for 237 regionally enriched genes.
Download: D’Souza gene exp. rank.xls
Additional file 2: Summary of expression profiles of region-specific or enriched genes by subanatomical region.
Download: D’Souza supplimentary #2.doc
Additional file 3: Top 12 over-represented GO terms in each ontology category among the 237 regionally enriched genes.
Download: D’Souza supp.xls
Additional file 4: Top 10 over-represented GO terms in each ontology category among the genes in each of 18 SAGE libraries.
Download: D’Souza supp #2.xls

Portales-Casamar E, Kirov S, Lim J, Lithwick S, Swanson MI, Ticoll A, Snoddy J, Wasserman WW. (2007) PAZAR: a Framework for Collection and Dissemination of Cis-regulatory Sequence Annotation. Genome Biol. 8, R207.
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Download: Portales-Casamar Pazar 2007.pdf